ABRF 2013: Proteomics Track
SCIENTIFIC SESSIONS AND TUTORIALS
Molecular Interactions /Interactomics
How to Generate High Quality Protein Interaction Maps
Alexey Nesvizhskii, University of Michigan
Mapping Cancer Interactomes Using Mass Spectrometry
Anne-Claude Gingras, Samuel Lunenfeld Research Institute at Mount Sinai Hospital
Identifying Specific Protein-DNA Interactions Using Quantitative Mass Spectrometry-Based Proteomics
Michiel Vermeulen, University Medical Center Utrecht, The Netherlands
Epigenetic Mechanisms: Protein and DNA Covalent Modifications
Epigenomic Analysis of Multi-Lineage Differentiation of the Human Embyronic Stem Cells
Bing Ren, University of California, San Diego
De Novo Sequencing of Small Non-coding RNA Using Bottom-Up MALDI Spiral TOF Mass Spectrometry
Norman Chiu, University of North Carolina at Greensboro
Quantitative Proteomics for Understanding the Histone Code
Benjamin Garcia, University of Pennsylvania
Biostatistical Analysis of Large-Scale Proteomics Datasets
Statistics in the Design and Planning of Proteomic Experiments
David Cairns, University of Leeds
Quantitative Analysis of Discovery-Based MS/MS Results
Brian C. Searle, Proteome Software, Inc.
Biostatical Tools for Targeted and Data-Independent Proteomics Results
Christopher Colangelo, Yale University
Biomarkers
Metabolite Profiles of Diabetes Risk
Robert Gerszten, Massachusetts General Hospital
Metabolite Profiles of Cardiovascular Risk
Svati Shah, Duke University
SOMAmers and SOMAscan -Protein Biomarker Discovery to Clinical Assay
Preston Hensley, Somalogic
Data-Independent Acquisition Mass Spectrometry (SRM, SWATH)
Nathalie Selevsek, ETH Zurich Institute of Molecular Systems Biology
Christopher Colangelo, W.M. Keck Foundation Biotechnology Resource Laboratory, Yale University
Bad Data in Mass Spectrometry - Real-Life Examples, Common Sources, Practical Solutions
Allis Chien, Stanford University
Brett Phinney, University of California, Davis
David Quilici, University of Nevada, Reno
RESEARCH GROUP STUDIES
Proteome Informatics Research Group (iPRG)
Session Organizer: Robert Chalkley, University of California, San Francisco
Presenters:
Robert Chalkley, University of California, San Francisco
Eric Deutsch, Institute of Systems Biology
Proteomics Research Group (PRG)
The PRG2012 Study: Assessing longitudinal variability in routine peptide LC-MS/MS analysis (Part 1)
Maureen Bunger, Proteovations, LLC
The PRG2012 Study: Assessing longitudinal variability in routine peptide LC-MS/MS analysis (Part 2)
David Tabb, Vanderbilt University
Proteomics Standards Research Group (sPRG)
Qualitative Analysis of the Degradation Pathways of Selected Peptides from the ABRF 2011-2012 Study
Craig Dufresne, Thermo Fisher Scientific
Development and Initial Evaluation of a Quantitative Peptide Standard
Scott A. Shaffer, University of Massachusetts Medical School
Glycoprotein Research Group (gPRG)
gPRG 2013 Interlaboratory Study: Quantitative N-glycan Profiling of Prostate Specific Antigen
Nancy Leymarie, Boston University School of Medicine
Evaluation of Two Complementary Methods for Quantitative Profiling of PSA N-Glycans and N-Glycopeptides
Morten Thaysen-Andersen, Macquarie University, Sydney, Australia
Top-Down and Bottom-Up Assessment and Quantification of the Glycosylation Sites in 2 Batches of PSA as Contribution to the 2013 ABRF-gPRG Study
Detlev Suckau, Bruker Daltonik